PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016208m
Common NameCICLE_v10015595mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family DBB
Protein Properties Length: 279aa    MW: 31012 Da    PI: 4.2894
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016208mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.11.8e-081554437
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                       C+ +++k + l+C+ ++  lC  C +++H+       H
  Ciclev10016208m 15 ALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSAnalslrH 54
                     57*****************************645555555 PP

2zf-B_box19.12.7e-0657100340
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                       ++C+++  ++++  C + + +lC+dC   +H +      H+++
  Ciclev10016208m  57 SQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNssvssvHERS 100
                      589**************************99*556788888766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-91259IPR000315B-box-type zinc finger
PROSITE profilePS501199.4711259IPR000315B-box-type zinc finger
PfamPF006432.8E-61654IPR000315B-box-type zinc finger
CDDcd000218.30E-71647No hitNo description
PROSITE profilePS501199.07255102IPR000315B-box-type zinc finger
CDDcd000212.49E-55988No hitNo description
SMARTSM003360.9760102IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEDSFKLSPG SSMLALCDFC NSKLAVLYCT ADSAKLCLFC DQQIHSANAL SLRHLRSQIC  60
DNCRAEPVSV RCCTENLMLC QDCDWDSHYN SSVSSVHERS SVEGFSGCPS VTELASFFDL  120
MGDDLLNLGS GFGVYEPKML NFEELAVPTQ NCSVFMSGNK YKKEVYEQLV EIGKRDLVRF  180
NGNGAELGPG TTTSICDQYG YTQSLEVENI DEEKLLNPKT AFTSLLAFPN NTDLREHDRC  240
VADGKLMWDW DPSYPAAQVG INILLLSNFF FLFPDIYC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446977.10.0hypothetical protein CICLE_v10015595mg
SwissprotO228002e-48COL14_ARATH; Zinc finger protein CONSTANS-LIKE 14
TrEMBLV4U2X20.0V4U2X2_9R
STRINGPOPTR_0001s33080.12e-79(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.16e-43B-box type zinc finger protein with CCT domain